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Finally figured it out, after checking django documenation. It says here
"Combining multiple aggregations with annotate() will yield the wrong results because joins are used instead of subqueries:"
So the soluction was to change to annotate to include distinct=True
in the Count like such
).annotate(total_votes=Count('userUpVotes', distinct=True) - Count('userDownVotes', distinct=True)).order_by('-total_votes')
Source:stackexchange.com